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10X Genomics visium spatial gene expression solution
Visium Spatial Gene Expression Solution, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visium+spatial+gene+expression+solution/expression+gene+slides+spatial+visium/pmc12276188-166-10-8
Average 86 stars, based on 1 article reviews
visium spatial gene expression solution - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

Gene Expression:

Article Title: MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance
Article Snippet: .. The Visium Spatial Gene Expression Solution from 10X Genomics allows for the analysis of mRNA using high-throughput sequencing and subsequently maps a transcript’s expression pattern in tissue sections using high-resolution microscope imaging. ..

Article Title: CXCL12/CXCR4 modulates macrophage efferocytosis to induce glomerular crescent formation and fibrosis via ELMO1/DOCK180/RAC1 signaling in ANCA-associated glomerulonephritis
Article Snippet: .. Tissue sections were processed and imaged using the 10X Genomics Visium Spatial Gene Expression Solution. .. To validate Mφ polarization via immunofluorescence (IF), tissue sections were incubated at 4°C for 14 h with anti-CD163 (1:100, ab156769, Abcam, Cambridge, UK) and anti-CD86 (1:200, A1199, ABclonal, Wuhan, China) antibodies.

Article Title: Spatial omics and multiplexed imaging to explore cancer biology.
Article Snippet: 1Advanced Technology and Biology Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.. 2Immunology Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.. 3Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, The University of Melbourne, Melbourne, Victoria, Australia.

Article Title: Divergent WNT signaling and drug sensitivity profiles within hepatoblastoma tumors and organoids
Article Snippet: .. ST was performed using the Visium Spatial Gene Expression Solution (10x Genomics) according to the manufacturer’s protocols. .. In brief, 10 μm thick tissue sections were cut in a cryostat (Cryostar NX70, Thermo Fisher) and placed within the capture area of Visium Spatial Gene Expression Slides.

Article Title: Construction of a novel choline metabolism-related signature to predict prognosis, immune landscape, and chemotherapy response in colon adenocarcinoma
Article Snippet: .. As shown in , based on the Visium Spatial Gene Expression Solution released by 10X Genomics, we obtained the spatial expression information of choline metabolism-related genes on Hematoxylin-Eosin (HE) staining sections of COAD tissue, and identified eighteen cell clusters by unsupervised clustering. visualized the spatial expression information of CHKB, which is mainly highly expressed in cluster 6, cluster 8 and cluster 9. ..

Article Title: Divergent WNT signaling and drug sensitivity profiles within hepatoblastoma tumors and organoids.
Article Snippet: .. ST was performed using the Visium Spatial Gene Expression Solution (10x Genomics) according to the manufacturer’s protocols. .. In brief, 10 μm thick tissue sections were cut in a cryostat (Cryostar NX70, Thermo Fisher) and placed within the capture area of Visium Spatial Gene Expression Slides.

Article Title: Construction of a novel choline metabolism-related signature to predict prognosis, immune landscape, and chemotherapy response in colon adenocarcinoma.
Article Snippet: .. As shown in Figure 8J, based on the Visium Spatial Gene Expression Solution released by 10X Genomics, we obtained the spatial expression information of choline metabolism-related genes on Hematoxylin-Eosin (HE) Frontiers in Immunology 11 staining sections of COAD tissue, and identified eighteen cell clusters by unsupervised clustering. ..

Article Title: Spatial transcriptomics of a parasitic flatworm provides a molecular map of drug targets and drug resistance genes
Article Snippet: Parasites were then used for inhibitor treatments in vitro or embedded in O.C.T. compound (Tissue-Tek, Sakura Finetek, Germany), frozen on dry ice and stored at −80 °C until use for Visium or in situ hybridizations. .. We performed spatial transcriptomics using the Visium Spatial Gene Expression Solution (10x Genomics, US), which makes use of probe-coated glass slides to capture mRNA from tissue sections. .. Adult F. hepatica embedded in O.C.T. compound were used to prepare transversal cryosections of 10 μm thickness with a cryostat Microm HM525 or Epredia CryoStar NX50 (Thermo Fisher Scientific).

Next-Generation Sequencing:

Article Title: MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance
Article Snippet: .. The Visium Spatial Gene Expression Solution from 10X Genomics allows for the analysis of mRNA using high-throughput sequencing and subsequently maps a transcript’s expression pattern in tissue sections using high-resolution microscope imaging. ..

Expressing:

Article Title: MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance
Article Snippet: .. The Visium Spatial Gene Expression Solution from 10X Genomics allows for the analysis of mRNA using high-throughput sequencing and subsequently maps a transcript’s expression pattern in tissue sections using high-resolution microscope imaging. ..

Article Title: Construction of a novel choline metabolism-related signature to predict prognosis, immune landscape, and chemotherapy response in colon adenocarcinoma
Article Snippet: .. As shown in , based on the Visium Spatial Gene Expression Solution released by 10X Genomics, we obtained the spatial expression information of choline metabolism-related genes on Hematoxylin-Eosin (HE) staining sections of COAD tissue, and identified eighteen cell clusters by unsupervised clustering. visualized the spatial expression information of CHKB, which is mainly highly expressed in cluster 6, cluster 8 and cluster 9. ..

Article Title: Construction of a novel choline metabolism-related signature to predict prognosis, immune landscape, and chemotherapy response in colon adenocarcinoma.
Article Snippet: .. As shown in Figure 8J, based on the Visium Spatial Gene Expression Solution released by 10X Genomics, we obtained the spatial expression information of choline metabolism-related genes on Hematoxylin-Eosin (HE) Frontiers in Immunology 11 staining sections of COAD tissue, and identified eighteen cell clusters by unsupervised clustering. ..

Microscopy:

Article Title: MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance
Article Snippet: .. The Visium Spatial Gene Expression Solution from 10X Genomics allows for the analysis of mRNA using high-throughput sequencing and subsequently maps a transcript’s expression pattern in tissue sections using high-resolution microscope imaging. ..

Imaging:

Article Title: MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance
Article Snippet: .. The Visium Spatial Gene Expression Solution from 10X Genomics allows for the analysis of mRNA using high-throughput sequencing and subsequently maps a transcript’s expression pattern in tissue sections using high-resolution microscope imaging. ..

Spatial Transcriptomics:

Article Title: Spatial omics and multiplexed imaging to explore cancer biology.
Article Snippet: 1Advanced Technology and Biology Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.. 2Immunology Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.. 3Department of Medical Biology, Faculty of Medicine, Dentistry and Health Sciences, The University of Melbourne, Melbourne, Victoria, Australia.

Article Title: Spatial transcriptomics of a parasitic flatworm provides a molecular map of drug targets and drug resistance genes
Article Snippet: Parasites were then used for inhibitor treatments in vitro or embedded in O.C.T. compound (Tissue-Tek, Sakura Finetek, Germany), frozen on dry ice and stored at −80 °C until use for Visium or in situ hybridizations. .. We performed spatial transcriptomics using the Visium Spatial Gene Expression Solution (10x Genomics, US), which makes use of probe-coated glass slides to capture mRNA from tissue sections. .. Adult F. hepatica embedded in O.C.T. compound were used to prepare transversal cryosections of 10 μm thickness with a cryostat Microm HM525 or Epredia CryoStar NX50 (Thermo Fisher Scientific).

Staining:

Article Title: Construction of a novel choline metabolism-related signature to predict prognosis, immune landscape, and chemotherapy response in colon adenocarcinoma
Article Snippet: .. As shown in , based on the Visium Spatial Gene Expression Solution released by 10X Genomics, we obtained the spatial expression information of choline metabolism-related genes on Hematoxylin-Eosin (HE) staining sections of COAD tissue, and identified eighteen cell clusters by unsupervised clustering. visualized the spatial expression information of CHKB, which is mainly highly expressed in cluster 6, cluster 8 and cluster 9. ..

Article Title: Construction of a novel choline metabolism-related signature to predict prognosis, immune landscape, and chemotherapy response in colon adenocarcinoma.
Article Snippet: .. As shown in Figure 8J, based on the Visium Spatial Gene Expression Solution released by 10X Genomics, we obtained the spatial expression information of choline metabolism-related genes on Hematoxylin-Eosin (HE) Frontiers in Immunology 11 staining sections of COAD tissue, and identified eighteen cell clusters by unsupervised clustering. ..



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Image Search Results


(A–C) Visium images (A and B) and relative individual violin plots (C) showing the Rilpl2 expression level across the cell clusters detected in iWAT from sedentary (left) and exercise (right). (D–F) Individual violin plots showing the expression levels and distribution of Myo5a (D), Rab8a (E), and Rab10 (F) across cell clusters detected in iWAT from sedentary (left) and exercise (right).

Journal: Cell reports

Article Title: Exercise training and cold exposure trigger distinct molecular adaptations to inguinal white adipose tissue

doi: 10.1016/j.celrep.2024.114481

Figure Lengend Snippet: (A–C) Visium images (A and B) and relative individual violin plots (C) showing the Rilpl2 expression level across the cell clusters detected in iWAT from sedentary (left) and exercise (right). (D–F) Individual violin plots showing the expression levels and distribution of Myo5a (D), Rab8a (E), and Rab10 (F) across cell clusters detected in iWAT from sedentary (left) and exercise (right).

Article Snippet: Visium Spatial Gene Expression Solution v1 , 10x Genomics , PN-1000184.

Techniques: Expressing

Journal: Cell reports

Article Title: Exercise training and cold exposure trigger distinct molecular adaptations to inguinal white adipose tissue

doi: 10.1016/j.celrep.2024.114481

Figure Lengend Snippet:

Article Snippet: Visium Spatial Gene Expression Solution v1 , 10x Genomics , PN-1000184.

Techniques: Expressing, Software